"Pino" definitely can mean a car lift in PR; for example:
"Taller de mecánica con 1855 pc, En el barrio de Buena Vista; 2 baños, almacén y oficinas, incluye un pino de levantar autos."
"Tambien cuenta con taller de lavar carros dealer, Pino para levantar autos etc."
http://puerto-rico.clasificados.com/bienes-raices/pino-para-...
The location of the VIN (if that's what they were looking for) varies according to the vehicle. I admit it's not usually underneath, but perhaps it could have been engraved there as an anti-theft measure. Anyway, I think your first idea was probably right, and it's difficult to see what else this could mean. "Lo" would refer to the "auto", of course.